if(letter == '>'){
fastaFile.putback(letter);
break;
- }
+ }else if (letter == ' ') {;}
else if(isprint(letter)){
letter = toupper(letter);
if(letter == 'U'){letter = 'T';}
if(letter == '>'){
fastaFile.putback(letter);
break;
- }
+ }else if (letter == ' ') {;}
else if(isprint(letter)){
letter = toupper(letter);
if(letter == 'U'){letter = 'T';}
//********************************************************************************************************************
void Sequence::padFromPos(int end){
- cout << end << '\t' << endPos << endl;
+ //cout << end << '\t' << endPos << endl;
for(int j = end; j < endPos; j++) {
aligned[j] = '.';
}