changes for 1.16.0

[mothur.git] / sequence.cpp

diff --git a/sequence.cpp b/sequence.cpp
index 78fa266105c6be21ce5442250ef8c00f389ab078..872a0f091d49fddac359d528c53c799a50ef3c66 100644 (file)
--- a/sequence.cpp
+++ b/sequence.cpp
@@ -139,7 +139,7 @@ Sequence::Sequence(ifstream& fastaFile){
                m = MothurOut::getInstance();
                initialize();
                fastaFile >> name;
-
+               
                if (name.length() != 0) { 
                
                        name = name.substr(1); 
@@ -565,4 +565,16 @@ void Sequence::reverseComplement(){
        aligned = temp;
        
 }
-/**************************************************************************************************/
+
+//********************************************************************************************************************
+
+void Sequence::trim(int length){
+       
+       if(numBases > length){
+               unaligned = unaligned.substr(0,length);
+               numBases = length;
+       }
+       
+}
+
+///**************************************************************************************************/