pat's minor edits to distance calculations

[mothur.git] / seqsummarycommand.h

diff --git a/seqsummarycommand.h b/seqsummarycommand.h
index 02103e77e023fff8e60b1bc71cdd52e47bf09470..e6b3b879b8f25e72d2151ae69fae8a75f211909d 100644 (file)
--- a/seqsummarycommand.h
+++ b/seqsummarycommand.h
@@ -12,25 +12,18 @@
 
 #include "mothur.h"
 #include "command.hpp"
-#include "globaldata.hpp"
-#include "readfasta.h"
-#include "readnexus.h"
-#include "readclustal.h"
-#include "readseqsphylip.h"
-
-using namespace std;
 
 class SeqSummaryCommand : public Command {
 public:
-       SeqSummaryCommand();
+       SeqSummaryCommand(string);
        ~SeqSummaryCommand();
        int execute();
+       void help();
        
 private:
-       int numSeqs;    
-       GlobalData* globaldata; 
-       ReadSeqs* readSeqs;
-       SequenceDB* db;
+       bool abort;
+       string fastafile, outputDir;
+
 };
 
 #endif