added sequence name to error string in fastq.info. Changed np_shannon to npshannon.

[mothur.git] / seqsummarycommand.cpp

diff --git a/seqsummarycommand.cpp b/seqsummarycommand.cpp
index eeba0417b08f90aeb19d0ecf3664010133ad88fe..e8f73ca10875f8321f624adfb62ee02f7baf2770 100644 (file)
--- a/seqsummarycommand.cpp
+++ b/seqsummarycommand.cpp
@@ -131,9 +131,13 @@ SeqSummaryCommand::SeqSummaryCommand(string option)  {
                        
                        string temp = validParameter.validFile(parameters, "processors", false);        if (temp == "not found"){       temp = m->getProcessors();      }
                        m->setProcessors(temp);
-                       convert(temp, processors);
-
-
+                       m->mothurConvert(temp, processors);
+                       
+                       if (namefile == "") {
+                               vector<string> files; files.push_back(fastafile);
+                               parser.getNameFile(files);
+                       }
+                       
                }
        }
        catch(exception& e) {