added cutoff change to mgcluster

[mothur.git] / seqerrorcommand.h

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index cb715ce05bc1edad8f2790cd78b67a356eafd7c3..e467df11c99d735a482328c7dbe64aa623192a95 100644 (file)
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -50,6 +50,8 @@ public:
        string getCommandCategory()             { return "Sequence Processing";         }
        string getHelpString(); 
        string getCitation() { return "http://www.mothur.org/wiki/Seq.error"; }
+       string getDescription()         { return "seq.error"; }
+
        
        int execute(); 
        void help() { m->mothurOut(getHelpString()); }  
@@ -84,7 +86,7 @@ private:
 
        string queryFileName, referenceFileName, qualFileName, reportFileName, namesFileName, outputDir;
        double threshold;
-       bool ignoreChimeras, filter;
+       bool ignoreChimeras;
        int numRefs, processors;
        int maxLength, totalBases, totalMatches;
        //ofstream errorSummaryFile, errorSeqFile;