ReferenceDB* rdb;
struct linePair {
- unsigned long int start;
- unsigned long int end;
- linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+ unsigned long long start;
+ unsigned long long end;
+ linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
};
vector<int> processIDS; //processid
void printErrorQuality(map<char, vector<int> >);
void printQualityFR(vector<vector<int> >, vector<vector<int> >);
- int setLines(string, string, string, vector<unsigned long int>&, vector<unsigned long int>&, vector<unsigned long int>&);
+ int setLines(string, string, string, vector<unsigned long long>&, vector<unsigned long long>&, vector<unsigned long long>&);
int driver(string, string, string, string, string, string, linePair, linePair, linePair);
int createProcesses(string, string, string, string, string, string);