fixed bug in seqerrorcommand

[mothur.git] / seqerrorcommand.h

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index 00b536771ca730945324a3674d2a34646cddf25d..1194d42f2dfca3a8eedf3d379a7bd3aa3bd50661 100644 (file)
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -68,13 +68,13 @@ private:
        double threshold;
        bool ignoreChimeras;
        int numRefs;
+       int maxLength;
        ofstream errorSummaryFile, errorSeqFile;
        vector<string> outputNames;
        map<string, vector<string> > outputTypes;
        
        vector<Sequence> referenceSeqs;
        vector<vector<int> > substitutionMatrix;
-       int a,t,g,c,gap,n;
 };
 
 #endif