public:
SensSpecCommand(string);
- ~SensSpecCommand();
- int execute();
- void help();
+ SensSpecCommand();
+ ~SensSpecCommand(){}
+
+ vector<string> setParameters();
+ string getCommandName() { return "sens.spec"; }
+ string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
void processPhylip();
void setUpOutput();
void outputStatistics(string, string);
- string listFile, distFile, nameFile, sensSpecFileName;
+ string listFile, distFile, nameFile, sensSpecFileName, phylipfile, columnfile;
string outputDir;
string format;
+ vector<string> outputNames;
long int truePositives, falsePositives, trueNegatives, falseNegatives;
bool abort;
int precision;
};
-#endif
\ No newline at end of file
+#endif
+
+
+