vector<string> setParameters();
string getCommandName() { return "sens.spec"; }
string getCommandCategory() { return "OTU-Based Approaches"; }
- string getOutputFileNameTag(string, string);
+
string getHelpString();
+ string getOutputPattern(string);
string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nhttp://www.mothur.org/wiki/Sens.spec"; }
string getDescription() { return "sens.spec"; }
int fillSeqPairSet(set<string>&, ListVector*&);
int process(map<string, int>&, string, bool&, string&);
int process(set<string>&, string, bool&, string&, int);
+ string preProcessList();
};