working on make.contigs. fixed trim.seqs filename issue

[mothur.git] / sensspeccommand.h

diff --git a/sensspeccommand.h b/sensspeccommand.h
index a5072e80c4bd908ed63d0f1ab34c83a5285b2e95..73b74e3983a9b1e4078a5ee55e5ae975fd40f944 100644 (file)
--- a/sensspeccommand.h
+++ b/sensspeccommand.h
@@ -26,9 +26,10 @@ public:
        vector<string> setParameters();
        string getCommandName()                 { return "sens.spec";                           }
        string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getOutputFileNameTag(string, string);
+       
        string getHelpString(); 
-       string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol. \nhttp://www.mothur.org/wiki/Sens.spec"; }
+    string getOutputPattern(string);   
+       string getCitation() { return "Schloss PD, Westcott SL (2011). Assessing and improving methods used in OTU-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol 77:3219.\nhttp://www.mothur.org/wiki/Sens.spec"; }
        string getDescription()         { return "sens.spec"; }
 
        int execute();