lineLabel = validParameter.validFile(parameters, "label", false); if (lineLabel == "not found") { lineLabel = ""; }
- sensSpecFileName = listFile.substr(0,listFile.find_last_of('.')) + ".sensspec";
+ sensSpecFileName = outputDir + m->getRootName(m->getSimpleName(listFile)) + ".sensspec";
}
}
catch(exception& e) {
if(format == "phylip") { processPhylip(); }
else if(format == "column") { processColumn(); }
+ m->mothurOutEndLine();
+ m->mothurOut("Output File Name: "); m->mothurOutEndLine();
+ m->mothurOut(sensSpecFileName); m->mothurOutEndLine();
+ m->mothurOutEndLine();
+
return 0;
}