added sharedRabundFloatVector class to represent the relabund file. modified read...

[mothur.git] / screenseqscommand.h

diff --git a/screenseqscommand.h b/screenseqscommand.h
index f1b72051250d07a389ed332b0690cbcda3b807c0..2c31ba2245b523b7f18c0a3559ee9cd6f85890df 100644 (file)
--- a/screenseqscommand.h
+++ b/screenseqscommand.h
@@ -23,10 +23,11 @@ public:
 private:
 
        struct linePair {
-               int start;
-               int numSeqs;
-               linePair(long int i, int j) : start(i), numSeqs(j) {}
+               unsigned long int start;
+               unsigned long int end;
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
        };
+
        vector<int> processIDS;   //processid
        vector<linePair*> lines;
 
@@ -34,11 +35,11 @@ private:
        int screenGroupFile(set<string>);
        int screenAlignReport(set<string>);
        
-       int driver(linePair*, string, string, string, string, set<string>&);
-       int createProcesses(string, string, string, string, set<string>&);
+       int driver(linePair*, string, string, string, set<string>&);
+       int createProcesses(string, string, string, set<string>&);
        
        #ifdef USE_MPI
-       int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector<long>&, set<string>&);
+       int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&, set<string>&);
        #endif
 
        bool abort;