struct linePair {
unsigned long int start;
- int numSeqs;
- linePair(unsigned long int i, int j) : start(i), numSeqs(j) {}
+ unsigned long int end;
+ linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
};
+
vector<int> processIDS; //processid
vector<linePair*> lines;
int screenGroupFile(set<string>);
int screenAlignReport(set<string>);
- int driver(linePair*, string, string, string, string, set<string>&);
- int createProcesses(string, string, string, string, set<string>&);
+ int driver(linePair*, string, string, string, set<string>&);
+ int createProcesses(string, string, string, set<string>&);
#ifdef USE_MPI
- int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector<long>&, set<string>&);
+ int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&, set<string>&);
#endif
bool abort;