private:
void screenNameGroupFile(set<string>);
void screenGroupFile(set<string>);
-
+ void screenAlignReport(set<string>);
+
bool abort;
- string fastafile, namefile, groupfile;
+ string fastafile, namefile, groupfile, alignreport;
int startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength;
};