if ($calcCI) {
$command = $dir."rsem-run-gibbs $refName $sampleName $sampleToken $BURNIN $CHAINLEN $SAMPLEGAP";
+# $command .= " -p $nThreads";
if ($quiet) { $command .= " -q"; }
print "$command\n";
$status = system($command);
}
if (!$keep_intermediate_files) {
- $status = system ("rm -rf $tmp_dir");
+ $status = system ("rm -rf $temp_dir");
if ($status != 0) {
print "Fail to delete the temporary folder!\n";
exit(-1);
mmliver_paired_end_quals
=cut
+
+# LocalWords: usr