modified reverse.seqs and qualscores.cpp

[mothur.git] / reversecommand.h

diff --git a/reversecommand.h b/reversecommand.h
index 874bde62ff5f315d392fc3c51479099b41ada008..bd8d1194ff095fa5fecff1b51570520b849dbf9a 100644 (file)
--- a/reversecommand.h
+++ b/reversecommand.h
@@ -15,14 +15,21 @@
 class ReverseSeqsCommand : public Command {
 public:
        ReverseSeqsCommand(string);
+       ReverseSeqsCommand();
        ~ReverseSeqsCommand();
+       vector<string> getRequiredParameters();
+       vector<string> getValidParameters();
+       vector<string> getRequiredFiles();
+       map<string, vector<string> > getOutputFiles() { return outputTypes; }
        int execute();
        void help();
        
 private:
 
        bool abort;
-       string fasta, outputDir;
+       string fastaFileName, qualFileName, outputDir;
+       vector<string> outputNames;
+       map<string, vector<string> > outputTypes;
        
 };