*
*/
+#include "mothur.h"
+#include "mothurout.h"
#include "reportfile.h"
/**************************************************************************************************/
repFile >> templateName;
repFile >> templateLength;
repFile >> searchMethod;
- repFile >> searchScore;
+ repFile >> dummySearchScore;
repFile >> alignmentMethod;
repFile >> queryStart;
repFile >> queryEnd;
repFile >> longestInsert;
repFile >> simBtwnQueryAndTemplate;
+ if(dummySearchScore != "nan"){
+ istringstream stream(dummySearchScore);
+ stream >> searchScore;
+ }
+ else{
+ searchScore = 0;
+ }
+
m->gobble(repFile);
}
catch(exception& e) {