major change to the tree class to use the count table class instead of tree map....

[mothur.git] / removeseqscommand.h

diff --git a/removeseqscommand.h b/removeseqscommand.h
index b89a509c5f76971d9df9de9a3fd4e9113a70b816..474951a9feaee7d497417cf2a03f206367056241 100644 (file)
--- a/removeseqscommand.h
+++ b/removeseqscommand.h
@@ -23,9 +23,11 @@ class RemoveSeqsCommand : public Command {
                vector<string> setParameters();
                string getCommandName()                 { return "remove.seqs";                         }
                string getCommandCategory()             { return "Sequence Processing";         }
-               string getHelpString(); 
+               string getOutputFileNameTag(string, string);
+       string getHelpString(); 
                string getCitation() { return "http://www.mothur.org/wiki/Remove.seqs"; }
-       
+               string getDescription()         { return "removes sequences from a list, fasta, name, group, alignreport, quality or taxonomy file"; }
+
                int execute(); 
                void help() { m->mothurOut(getHelpString()); }  
        
@@ -40,7 +42,6 @@ class RemoveSeqsCommand : public Command {
                int readName();
                int readGroup();
                int readAlign();
-               void readAccnos();
                int readList();
                int readTax();
                int readQual();