1.9

[mothur.git] / removeseqscommand.h

diff --git a/removeseqscommand.h b/removeseqscommand.h
index 1dcb0fceab5ed3800d2b604d2ba32ff632cfec8c..1f429d92810402f64a1c2d776510719aa7113610 100644 (file)
--- a/removeseqscommand.h
+++ b/removeseqscommand.h
@@ -24,14 +24,15 @@ class RemoveSeqsCommand : public Command {
        private:
                set<string> names;
                string accnosfile, fastafile, namefile, groupfile, alignfile, listfile, outputDir;
-               bool abort;
+               bool abort, dups;
+               vector<string> outputNames;
                
-               void readFasta();
-               void readName();
-               void readGroup();
-               void readAlign();
+               int readFasta();
+               int readName();
+               int readGroup();
+               int readAlign();
                void readAccnos();
-               void readList();
+               int readList();
                
 };