moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / removerarecommand.h

diff --git a/removerarecommand.h b/removerarecommand.h
deleted file mode 100644 (file)
index 9e58c06..0000000
--- a/removerarecommand.h
+++ /dev/null
@@ -1,56 +0,0 @@
-#ifndef REMOVERARECOMMAND_H
-#define REMOVERARECOMMAND_H
-
-/*
- *  removerarecommand.h
- *  mothur
- *
- *  Created by westcott on 1/21/11.
- *  Copyright 2011 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "listvector.hpp"
-
-
-class RemoveRareCommand : public Command {
-       
-public:
-       
-       RemoveRareCommand(string);      
-       RemoveRareCommand();
-       ~RemoveRareCommand(){}
-       
-       vector<string> setParameters();
-       string getCommandName()                 { return "remove.rare";                         }
-       string getCommandCategory()             { return "OTU-Based Approaches";        }
-       string getHelpString(); 
-       string getCitation() { return "http://www.mothur.org/wiki/Remove.rare"; }
-       string getDescription()         { return "removes rare sequences from a sabund, rabund, shared or list and group file"; }
-
-       
-       int execute(); 
-       void help() { m->mothurOut(getHelpString()); }  
-       
-private:
-       string sabundfile, rabundfile, sharedfile, groupfile, listfile, outputDir, groups, label;
-       int nseqs, allLines;
-       bool abort, byGroup;
-       vector<string> outputNames, Groups;
-       set<string> labels;
-       
-       int processSabund();
-       int processRabund();
-       int processList();
-       int processShared();
-       int processLookup(vector<SharedRAbundVector*>&, ofstream&);
-       
-};
-
-#endif
-
-
-
-