added chimera.uchime

[mothur.git] / removerarecommand.cpp

diff --git a/removerarecommand.cpp b/removerarecommand.cpp
index 41355b9560e910c03be93e527524e4363b86be11..cd0b602113f496af4a1db27850e882ae04d29077 100644 (file)
--- a/removerarecommand.cpp
+++ b/removerarecommand.cpp
@@ -50,7 +50,7 @@ string RemoveRareCommand::getHelpString(){
                helpString += "The nseqs parameter allows you to set the cutoff for an otu to be deemed rare. It is required.\n";
                helpString += "The remove.rare command should be in the following format: remove.rare(shared=yourSharedFile, nseqs=yourRareCutoff).\n";
                helpString += "Example remove.rare(shared=amazon.fn.shared, nseqs=2).\n";
-               helpString += "Note: No spaces between parameter labels (i.e. shared), '=' and parameters (i.e.yourSharedFile).\n\n";
+               helpString += "Note: No spaces between parameter labels (i.e. shared), '=' and parameters (i.e.yourSharedFile).\n";
                return helpString;
        }
        catch(exception& e) {
@@ -83,6 +83,7 @@ RemoveRareCommand::RemoveRareCommand(string option)  {
                
                //allow user to run help
                if(option == "help") { help(); abort = true; calledHelp = true; }
+               else if(option == "citation") { citation(); abort = true; calledHelp = true;}
                
                else {
                        vector<string> myArray = setParameters();