//
#include "command.hpp"
+#include "inputdata.h"
+#include "listvector.hpp"
+#include "sharedrabundvector.h"
/**************************************************************************************************/
private:
bool abort;
- string outputDir, accnosfile, constaxonomyfile, otucorrfile, corraxesfile;
+ string outputDir, accnosfile, constaxonomyfile, otucorrfile, corraxesfile, listfile, sharedfile, label;
vector<string> outputNames;
set<string> labels;
+ ListVector* list;
+ vector<SharedRAbundVector*> lookup;
int readClassifyOtu();
int readOtuAssociation();
int readCorrAxes();
+ int readList();
+ int readShared();
+ int getListVector();
+ int getShared();
};
/**************************************************************************************************/