major change to the tree class to use the count table class instead of tree map....

[mothur.git] / removelineagecommand.h

diff --git a/removelineagecommand.h b/removelineagecommand.h
index bda398b76b7cf8b0b2bf86c618e8adff71a1ff3a..a5caec8e4c3e0f04ec7744489c3f27c0a495e38d 100644 (file)
--- a/removelineagecommand.h
+++ b/removelineagecommand.h
@@ -23,7 +23,8 @@ class RemoveLineageCommand : public Command {
                vector<string> setParameters();
                string getCommandName()                 { return "remove.lineage";                      }
                string getCommandCategory()             { return "Phylotype Analysis";          }
-               string getHelpString(); 
+               string getOutputFileNameTag(string, string);
+       string getHelpString(); 
                string getCitation() { return "http://www.mothur.org/wiki/Remove.lineage"; }
                string getDescription()         { return "removes sequences from a list, fasta, name, group, alignreport or taxonomy file from a given taxonomy or set of taxonomies"; }
 
@@ -42,7 +43,6 @@ class RemoveLineageCommand : public Command {
                int readAlign();
                int readList();
                int readTax();  
-               string removeConfidences(string);
                vector< map<string, float> > getTaxons(string);
 };