chimera.slayer

[mothur.git] / removelineagecommand.h

diff --git a/removelineagecommand.h b/removelineagecommand.h
index d18fc23076d83a8a3d4083ce2423af47cfd08e2f..9fdca48db66da3e0ddf5c603949c7380e61155b0 100644 (file)
--- a/removelineagecommand.h
+++ b/removelineagecommand.h
@@ -17,10 +17,17 @@ class RemoveLineageCommand : public Command {
        public:
        
                RemoveLineageCommand(string);
+               RemoveLineageCommand();
                ~RemoveLineageCommand(){};
-               int execute();
-               void help();    
-               
+       
+               vector<string> setParameters();
+               string getCommandName()                 { return "remove.lineage";                      }
+               string getCommandCategory()             { return "Phylotype Analysis";          }
+               string getHelpString(); 
+       
+               int execute(); 
+               void help() { m->mothurOut(getHelpString()); }  
+       
        private:
                set<string> names;
                vector<string> outputNames;
@@ -34,6 +41,7 @@ class RemoveLineageCommand : public Command {
                int readList();
                int readTax();  
                string removeConfidences(string);
+               vector< map<string, float> > getTaxons(string);
 };
 
 #endif