private:
set<string> names;
- string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups;
+ string accnosfile, fastafile, namefile, groupfile, listfile, taxfile, outputDir, groups, sharedfile;
bool abort;
vector<string> outputNames, Groups;
GroupMap* groupMap;
int readFasta();
+ int readShared();
int readName();
int readGroup();
void readAccnos();