classify.seqs allows sequences to be in taxonomy file that are not in template. ...

[mothur.git] / removegroupscommand.cpp

diff --git a/removegroupscommand.cpp b/removegroupscommand.cpp
index 86ddf946a9d51c1df7e43783e0470bf5aead6301..a29906c5f41769c93b3675b88eb1267fa2eb7127 100644 (file)
--- a/removegroupscommand.cpp
+++ b/removegroupscommand.cpp
@@ -71,7 +71,7 @@ string RemoveGroupsCommand::getOutputFileNameTag(string type, string inputName="
             else if (type == "taxonomy")    {   outputFileName =  "pick" + m->getExtension(inputName);   }
             else if (type == "name")        {   outputFileName =  "pick" + m->getExtension(inputName);   }
             else if (type == "group")       {   outputFileName =  "pick" + m->getExtension(inputName);   }
-            else if (type == "count")       {   outputFileName =  "pick" + m->getExtension(inputName);   }
+            else if (type == "count")       {   outputFileName =  "pick.count_table";   }
             else if (type == "list")        {   outputFileName =  "pick" + m->getExtension(inputName);   }
             else if (type == "shared")      {   outputFileName =  "pick" + m->getExtension(inputName);   }
             else if (type == "design")      {   outputFileName =  "pick" + m->getExtension(inputName);   }