fix bug in unaligned seq.error / chimeraref

[mothur.git] / refchimeratest.cpp

diff --git a/refchimeratest.cpp b/refchimeratest.cpp
index 178d0c46386968982eb85e370d407396be42133b..c618e788386550f40cf83c6a328342022e47f243 100644 (file)
--- a/refchimeratest.cpp
+++ b/refchimeratest.cpp
@@ -117,10 +117,10 @@ int RefChimeraTest::analyzeUnalignedQuery(string queryName, string querySeq, ofs
     vector<string> queryAlign(numRefSeqs);
     vector<string> refAlign(numRefSeqs);
 
-    vector<vector<int> > leftDiffs(numRefSeqs, 0);
-    vector<vector<int> > rightDiffs(numRefSeqs, 0);
-    vector<vector<int> > leftMaps(numRefSeqs, 0);
-    vector<vector<int> > rightMaps(numRefSeqs, 0);
+    vector<vector<int> > leftDiffs(numRefSeqs);
+    vector<vector<int> > rightDiffs(numRefSeqs);
+    vector<vector<int> > leftMaps(numRefSeqs);
+    vector<vector<int> > rightMaps(numRefSeqs);
     
     int bestRefIndex = -1;
     int bestRefDiffs = numeric_limits<int>::max();
@@ -163,7 +163,7 @@ int RefChimeraTest::analyzeUnalignedQuery(string queryName, string querySeq, ofs
         vector<int> bestRight(seqLength, -1);
         
         for(int l=0;l<seqLength;l++){
-            
+                
             for(int i=0;i<numRefSeqs;i++){
                 if(rightDiffs[i][l] < singleRight[l]){
                     singleRight[l] = rightDiffs[i][l];