parsimony fix

[mothur.git] / readtreecommand.cpp

diff --git a/readtreecommand.cpp b/readtreecommand.cpp
index 452c0ec7b2fb881d46884832906ebd5053a5e7ae..a540c7444a4b2b67a03ca3be29120138faf43ef5 100644 (file)
--- a/readtreecommand.cpp
+++ b/readtreecommand.cpp
@@ -46,8 +46,12 @@ int ReadTreeCommand::execute(){
        
                read->read(); 
                
-               Tree* T = globaldata->gTree;
-//             T->createNewickFile();
+               vector<Tree*> T = globaldata->gTree;
+               
+               //assemble users trees
+               for (int i = 0; i < T.size(); i++) {
+                       T[i]->assembleTree();
+               }
                
                return 0;
        }
@@ -60,4 +64,5 @@ int ReadTreeCommand::execute(){
                exit(1);
        }
 }
-//**********************************************************************************************************************
\ No newline at end of file
+
+//**********************************************************************************************************************