mucked around some with the output in the unifrac.weighted, unifrac.unweighted, and...

[mothur.git] / readtreecommand.cpp

diff --git a/readtreecommand.cpp b/readtreecommand.cpp
index 452c0ec7b2fb881d46884832906ebd5053a5e7ae..63c62265455ad6b2348d5496a278245f75fe5f71 100644 (file)
--- a/readtreecommand.cpp
+++ b/readtreecommand.cpp
@@ -46,9 +46,12 @@ int ReadTreeCommand::execute(){
        
                read->read(); 
                
-               Tree* T = globaldata->gTree;
-//             T->createNewickFile();
+               vector<Tree*> T = globaldata->gTree;
                
+               //assemble users trees
+               for (int i = 0; i < T.size(); i++) {
+                       T[i]->assembleTree();
+               }
                return 0;
        }
        catch(exception& e) {
@@ -60,4 +63,5 @@ int ReadTreeCommand::execute(){
                exit(1);
        }
 }
-//**********************************************************************************************************************
\ No newline at end of file
+
+//**********************************************************************************************************************