bugs fixes while testing for 1.5 release

[mothur.git] / readtreecommand.cpp

diff --git a/readtreecommand.cpp b/readtreecommand.cpp
index 2a3c5d0cdf264ce0c4ecf614b4c3fd46d0ffe51c..0f07ac2f6d66bb1e68c322f74ddfc326b9d3f47e 100644 (file)
--- a/readtreecommand.cpp
+++ b/readtreecommand.cpp
@@ -119,6 +119,7 @@ int ReadTreeCommand::execute(){
                                //then you did not find it so report it 
                                if (count == globaldata->Treenames.size()) { 
                                        mothurOut(treeMap->namesOfSeqs[i] + " is in your namefile and not in your tree. It will be disregarded."); mothurOutEndLine();
+                                       treeMap->removeSeq(treeMap->namesOfSeqs[i]);
                                }
                        }
                }