worked on trim.seqs - added in the groupfiles for allfiles=t, cleaned up the outputNa...

[mothur.git] / readtree.h

diff --git a/readtree.h b/readtree.h
index 540f80cfa731ab2102fa0a8908737321f73a5cba..7cfb4b426eef1ca38e562ae1c52b4ad240afc4e3 100644 (file)
--- a/readtree.h
+++ b/readtree.h
@@ -43,7 +43,7 @@ class ReadTree {
 class ReadNewickTree : public ReadTree {
        
 public:
-       ReadNewickTree(string file) : treeFile(file) { openInputFile(file, filehandle); readOk = 0; } 
+       ReadNewickTree(string file) : treeFile(file) { m->openInputFile(file, filehandle); readOk = 0; } 
        ~ReadNewickTree() {};
        int read();
        
@@ -51,7 +51,7 @@ private:
        Tree* T;
        int readNewickInt(istream&, int&, Tree*);
        int readTreeString();
-       void nexusTranslation();
+       string nexusTranslation();
        ifstream filehandle;
        string treeFile;
        string holder;