deleted read.shared command and added its functionality to read.otu.

[mothur.git] / readsharedcommand.cpp

diff --git a/readsharedcommand.cpp b/readsharedcommand.cpp
deleted file mode 100644 (file)
index 0035156..0000000
--- a/readsharedcommand.cpp
+++ /dev/null
@@ -1,52 +0,0 @@
-/*
- *  readsharedcommand.cpp
- *  Mothur
- *
- *  Created by Sarah Westcott on 2/12/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "readsharedcommand.h"
-
-//**********************************************************************************************************************
-ReadSharedCommand::ReadSharedCommand(){
-       try {
-               globaldata = GlobalData::getInstance();
-               filename = globaldata->inputFileName;
-               read = new ReadPhilFile(filename);
-       }
-       catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the ReadSharedCommand class Function ReadSharedCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the ReadSharedCommand class function ReadSharedCommand. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-}
-
-//**********************************************************************************************************************
-
-ReadSharedCommand::~ReadSharedCommand(){
-       delete read;
-}
-
-//**********************************************************************************************************************
-
-int ReadSharedCommand::execute(){
-       try {
-               read->read(&*globaldata); 
-       
-               return 0;
-       }
-       catch(exception& e) {
-               cout << "Standard Error: " << e.what() << " has occurred in the ReadSharedCommand class Function execute. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-       catch(...) {
-               cout << "An unknown error has occurred in the ReadSharedCommand class function execute. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
-               exit(1);
-       }
-}
-//**********************************************************************************************************************
\ No newline at end of file