* Mothur
*
* Created by Thomas Ryabin on 4/24/09.
- * Copyright 2009 __MyCompanyName__. All rights reserved.
+ * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
*
*/
}
/*******************************************************************************/
-ReadPhylip::ReadPhylip(string file) {
+ReadPhylip::ReadPhylip(string file) : ReadSeqs(file) {
try {
- openInputFile(file, filehandle);
- phylipFile = file;
- globaldata = GlobalData::getInstance();
}
catch(exception& e) {
cout << "Standard Error: " << e.what() << " has occurred in the ReadTree class Function ReadTree. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
}
}
if(!(last && count == 0))
- sequencedb.set(count, sequencedb.get(count).getAligned() + sequence);
+ sequencedb.set(count, sequencedb.get(count).getUnaligned() + sequence);
if(letterCount == numLetters && count == 0)
last = true;
}