input = new InputData(philFile, globaldata->getFormat()); //format tells you whether philFile is list, rabund, sabund.
inputList = new InputData(philFile, globaldata->getFormat()); //format tells you whether philFile is list, rabund, sabund.
inputSabund = new InputData(philFile, globaldata->getFormat()); //format tells you whether philFile is list, rabund, sabund or shared.
+ inputRabund = new InputData(philFile, globaldata->getFormat());
}else {//there is an orderfile
input = new InputData(philFile, globaldata->getOrderFile(), globaldata->getFormat());
}
globaldata->gorder = order; //saving to be used by collect and rarefact commands.
sabund = inputSabund->getSAbundVector();
globaldata->sabund = sabund; //saving to be used by summary command.
+ rabund = inputRabund->getRAbundVector();
+ globaldata->rabund = rabund; //saving to be used by heatmap command.
list = inputList->getListVector();
globaldata->gListVector = list;
}else if (globaldata->getFormat() == "shared") {