removed readseqs, readfasta, readnexus, readclustal, readseqsphylip and updated seque...

[mothur.git] / readnexus.h

diff --git a/readnexus.h b/readnexus.h
index f6bfcbbef72826fb76a3dd33677fadae9f2fbe26..7a0efbae820c1e7aa03f30d03694ac4a09f61a39 100644 (file)
--- a/readnexus.h
+++ b/readnexus.h
@@ -9,30 +9,21 @@
  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
-using namespace std;
 
+#include "readseqs.h"
 #include "globaldata.hpp"
 #include "sequencedb.h"
 #include "mothur.h"
 
 /**********************************************************************************/
 
-class ReadNexus {
+class ReadNexus : public ReadSeqs {
 
        public:
                ReadNexus(string);
                ~ReadNexus();
                void read();
-               SequenceDB* getDB();            
-       
-       private:
-               GlobalData* globaldata;
-               string nexusFile;
-               ifstream filehandle;
-               SequenceDB sequencedb;
-               int readOk; // readOk = 0 means success, readOk = 1 means error(s).
-               
-                       
+               SequenceDB* getDB();                            
 };
 
 #endif
\ No newline at end of file