using namespace std;
-#include <string>
-#include <map>
#include "utilities.hpp"
#include "sparsematrix.hpp"
#include "progress.hpp"
#include "listvector.hpp"
#include "rabundvector.hpp"
-#include <exception>
-
#include "readmatrix.hpp"
if(square == 0){
- reading = new Progress("Reading matrix: ", nseqs * (nseqs - 1) / 2);
+ reading = new Progress("Reading matrix: ", nseqs * (nseqs - 1) / 2);
int index = 0;
}
else{
- reading = new Progress("Reading matrix: ", nseqs * nseqs);
+ reading = new Progress("Reading matrix: ", nseqs * nseqs);
int index = nseqs;
list = new ListVector(nameMap->getListVector());
- Progress* reading = new Progress("Reading matrix: ", nseqs * nseqs);
+ Progress* reading = new Progress("Reading matrix: ", nseqs * nseqs);
int lt = 1;
int refRow = 0; //we'll keep track of one cell - Cell(refRow,refCol) - and see if it's transpose