class ReadDistCommand : public Command {
public:
ReadDistCommand(string);
+ ReadDistCommand() {}
~ReadDistCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
FullMatrix* matrix;
GroupMap* groupMap;
string distFileName, format, method;
- string phylipfile, columnfile, namefile, groupfile;
+ string phylipfile, columnfile, namefile, groupfile, outputDir;
NameAssignment* nameMap;
+ vector<string> outputNames;
+ map<string, vector<string> > outputTypes;
- bool abort;
+ bool abort, sim;
};