*
*/
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
#include "command.hpp"
#include "readmatrix.hpp"
+#include "fullmatrix.h"
+#include "groupmap.h"
/* The read.dist command is used to read a distance matrix file.
The read.dist command parameter options are phylipfile, columnfile, namefile, cutoff and precision.
double cutoff;
int precision;
ReadMatrix* read;
+ FullMatrix* matrix;
+ GroupMap* groupMap;
string filename, format, method;
NameAssignment* nameMap;
};
-#endif
\ No newline at end of file
+#endif