fixed valid parameters to include shared parameter for read.shared command.

[mothur.git] / readdistcommand.h

diff --git a/readdistcommand.h b/readdistcommand.h
index 3dfda1ba5cb5960642c0891570290fa9ae0d01a1..981afa339308199105a0082c8458dd0b1ed7295c 100644 (file)
--- a/readdistcommand.h
+++ b/readdistcommand.h
@@ -9,11 +9,10 @@
  *
  */
 
-#include <Carbon/Carbon.h>
-#include <iostream>
-#include <fstream>
 #include "command.hpp"
 #include "readmatrix.hpp"
+#include "fullmatrix.h"
+#include "groupmap.h"
 
 /* The read.dist command is used to read a distance matrix file.  
 The read.dist command parameter options are phylipfile, columnfile, namefile, cutoff and precision. 
@@ -36,8 +35,10 @@ private:
        double cutoff;
        int precision;
        ReadMatrix* read;
+       FullMatrix* matrix;
+       GroupMap* groupMap;
        string filename, format, method;
        NameAssignment* nameMap;
 };
 
-#endif
\ No newline at end of file
+#endif