fixed phylip convert for cluster.split command

[mothur.git] / readdistcommand.h

diff --git a/readdistcommand.h b/readdistcommand.h
index b6e3ae44de298a115ce9a72de193b51ff951ea34..6241f97b5fb1b70f79a326360ace611a1866fa72 100644 (file)
--- a/readdistcommand.h
+++ b/readdistcommand.h
@@ -38,13 +38,11 @@ private:
        ReadMatrix* read;
        FullMatrix* matrix;
        GroupMap* groupMap;
-       string filename, format, method;
-       string phylipfile, columnfile, namefile, groupfile;
+       string distFileName, format, method;
+       string phylipfile, columnfile, namefile, groupfile, outputDir;
        NameAssignment* nameMap;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
-       bool abort;
+
+       bool abort, sim, hard;
 
 };