added checks for ^C to quit command instead of program

[mothur.git] / readdistcommand.h

diff --git a/readdistcommand.h b/readdistcommand.h
index b6e3ae44de298a115ce9a72de193b51ff951ea34..1f852be88e84223a3f07b9847f71e57ee8160442 100644 (file)
--- a/readdistcommand.h
+++ b/readdistcommand.h
@@ -38,12 +38,10 @@ private:
        ReadMatrix* read;
        FullMatrix* matrix;
        GroupMap* groupMap;
-       string filename, format, method;
-       string phylipfile, columnfile, namefile, groupfile;
+       string distFileName, format, method;
+       string phylipfile, columnfile, namefile, groupfile, outputDir;
        NameAssignment* nameMap;
-       OptionParser* parser;
-       map<string, string> parameters;
-       map<string, string>::iterator it;
+
        bool abort;
 
 };