else {
//valid paramters for this command
- string Array[] = {"phylip", "column", "name", "cutoff","hard", "precision", "group","outputdir","inputdir","sim"};
+ string Array[] = {"phylip", "column", "name", "cutoff", "precision", "group","outputdir","inputdir","sim"};
vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
OptionParser parser(option);
sim = isTrue(temp);
globaldata->sim = sim;
- temp = validParameter.validFile(parameters, "hard", false); if (temp == "not found") { temp = "F"; }
- hard = isTrue(temp);
-
temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "10"; }
convert(temp, cutoff);
- if (!hard) { cutoff += (5 / (precision * 10.0)); }
+ cutoff += (5 / (precision * 10.0));
if (abort == false) {
distFileName = globaldata->inputFileName;