temp = validParameter.validFile(parameters, "cutoff", false); if (temp == "not found") { temp = "10"; }
convert(temp, cutoff);
- cutoff += (5 / (precision * 10.0));
+ cutoff += (5 / (precision * 10.0));
if (abort == false) {
distFileName = globaldata->inputFileName;
m->mothurOut("For this use the read.dist command should be in the following format: \n");
m->mothurOut("read.dist(phylip=yourDistFile, name=yourNameFile, cutoff=yourCutoff, precision=yourPrecision) \n");
m->mothurOut("The phylip or column parameter is required, but only one may be used. If you use a column file the name filename is required. \n");
- m->mothurOut("The sim parameter is used to indicate that your distance file contains similiarity values instead of distance values. The default is false, if sim=true then mothur will convert the similairity values to distances. \n");
+ m->mothurOut("The sim parameter is used to indicate that your distance file contains similarity values instead of distance values. The default is false, if sim=true then mothur will convert the similarity values to distances. \n");
m->mothurOut("If you do not provide a cutoff value 10.00 is assumed. If you do not provide a precision value then 100 is assumed.\n");
m->mothurOut("The second way to use the read.dist command is to read a phylip or column and a group, so you can use the libshuff command.\n");
m->mothurOut("For this use the read.dist command should be in the following format: \n");