#include "mothur.h"
#include "nameassignment.hpp"
#include "listvector.hpp"
-#include "globaldata.hpp"
/******************************************************/
class ReadCluster {
public:
- ReadCluster(string, float, string);
+ ReadCluster(string, float, string, bool);
~ReadCluster();
- int read(NameAssignment*);
+ int read(NameAssignment*&);
string getOutputFile() { return OutPutFile; }
void setFormat(string f) { format = f; }
ListVector* getListVector() { return list; }
private:
- GlobalData* globaldata;
string distFile, outputDir;
string OutPutFile, format;
ListVector* list;
float cutoff;
MothurOut* m;
+ bool sortWanted;
- int convertPhylip2Column(NameAssignment*);
+ int convertPhylip2Column(NameAssignment*&);
};
/******************************************************/