fixed bug with trim.seqs- when a file is blank for a grouping mothur removed it,...

[mothur.git] / readcluster.h

diff --git a/readcluster.h b/readcluster.h
index 4574c8071616b47f389527f2fd90a5236326f4cd..9ca2a1b14010bf518e2bc366e4df9d77285361eb 100644 (file)
--- a/readcluster.h
+++ b/readcluster.h
@@ -21,7 +21,7 @@
 class ReadCluster {
        
 public:
-       ReadCluster(string, float);
+       ReadCluster(string, float, string, bool);
        ~ReadCluster();
        int read(NameAssignment*);
        string getOutputFile() { return OutPutFile; }
@@ -30,11 +30,12 @@ public:
        
 private:
        GlobalData* globaldata;
-       string distFile;
+       string distFile, outputDir;
        string OutPutFile, format;
        ListVector* list;
        float cutoff;
        MothurOut* m;
+       bool sortWanted;
        
        int convertPhylip2Column(NameAssignment*);
 };