changes to filter.seqs

[mothur.git] / readcluster.h

diff --git a/readcluster.h b/readcluster.h
index c81b1dd1b9f1684f54c70d666e1b3868076c1802..4574c8071616b47f389527f2fd90a5236326f4cd 100644 (file)
--- a/readcluster.h
+++ b/readcluster.h
@@ -13,6 +13,7 @@
 #include "mothur.h"
 #include "nameassignment.hpp"
 #include "listvector.hpp"
+#include "globaldata.hpp"
 
 
 /******************************************************/
@@ -22,19 +23,20 @@ class ReadCluster {
 public:
        ReadCluster(string, float);
        ~ReadCluster();
-       void read(NameAssignment*);
+       int read(NameAssignment*);
        string getOutputFile() { return OutPutFile; }
        void setFormat(string f) { format = f;  }
        ListVector* getListVector()             {       return list;    }
        
 private:
+       GlobalData* globaldata;
        string distFile;
        string OutPutFile, format;
        ListVector* list;
        float cutoff;
+       MothurOut* m;
        
-       void createHClusterFile();
-       void convertPhylip2Column(NameAssignment*);
+       int convertPhylip2Column(NameAssignment*);
 };
 
 /******************************************************/