fixed a bug in calculating the # of ambig bases

[mothur.git] / readclustal.h

diff --git a/readclustal.h b/readclustal.h
index 8556486cca62908eab5a64de7e08f8cefddfa3a7..547112c0791c6e65de957187ef8bdfe1a06ad3ef 100644 (file)
--- a/readclustal.h
+++ b/readclustal.h
@@ -6,33 +6,25 @@
  *  Mothur
  *
  *  Created by Thomas Ryabin on 4/24/09.
- *  Copyright 2009 __MyCompanyName__. All rights reserved.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  *
  */
 using namespace std;
 
+#include "readseqs.h"
 #include "globaldata.hpp"
 #include "sequencedb.h"
 #include "mothur.h"
 
 /**********************************************************************************/
 
-class ReadClustal {
+class ReadClustal : public ReadSeqs {
 
        public:
                ReadClustal(string);
                ~ReadClustal();
                void read();
-               SequenceDB* getDB();            
-       
-       private:
-               GlobalData* globaldata;
-               string clustalFile;
-               ifstream filehandle;
-               SequenceDB sequencedb;
-               int readOk; // readOk = 0 means success, readOk = 1 means error(s).
-               
-                       
+               SequenceDB* getDB();                    
 };
 
 #endif
\ No newline at end of file