class RareFactSharedCommand : public Command {
public:
- RareFactSharedCommand(string);
+ RareFactSharedCommand(string);
+ RareFactSharedCommand();
~RareFactSharedCommand();
+ vector<string> getRequiredParameters();
+ vector<string> getValidParameters();
+ vector<string> getRequiredFiles();
+ map<string, vector<string> > getOutputFiles() { return outputTypes; }
int execute();
void help();
ValidCalculators* validCalculator;
Rarefact* rCurve;
vector<Display*> rDisplays;
- int freq, nIters;
+ int nIters;
string format;
-
+ float freq;
+
bool abort, allLines, jumble;
set<string> labels; //holds labels to be used
string label, calc, groups, outputDir;
- vector<string> Estimators, Groups;
+ vector<string> Estimators, Groups, outputNames;
+ map<string, vector<string> > outputTypes;
};