private:
vector<SharedRAbundVector*> lookup;
- int nIters;
+ int nIters, subsampleSize, iters;
string format;
float freq;
map<int, string> file2Group; //index in outputNames[i] -> group
- bool abort, allLines, jumble, groupMode;
+ bool abort, allLines, jumble, groupMode, subsample;
set<string> labels; //holds labels to be used
string label, calc, groups, outputDir, sharedfile, designfile;
vector<string> Estimators, Groups, outputNames, Sets;
int process(GroupMap&, string);
vector<string> createGroupFile(vector<string>&);
+ int subsampleLookup(vector<SharedRAbundVector*>&, string);
};