private:
vector<SharedRAbundVector*> lookup;
- InputData* input;
- Rarefact* rCurve;
- vector<Display*> rDisplays;
int nIters;
string format;
float freq;
- bool abort, allLines, jumble;
+ map<int, string> file2Group; //index in outputNames[i] -> group
+ bool abort, allLines, jumble, groupMode;
set<string> labels; //holds labels to be used
- string label, calc, groups, outputDir, sharedfile;
- vector<string> Estimators, Groups, outputNames;
+ string label, calc, groups, outputDir, sharedfile, designfile;
+ vector<string> Estimators, Groups, outputNames, Sets;
+
+ int process(GroupMap&, string);
+ vector<string> createGroupFile(vector<string>&);
};